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mm9_heart-and-brain_peaks


All source data is linked in the references below. All the ChIP-seq datasets were processed with OccuPeak to generate genome-wide peak profiles.

References

  • GEO depository link: various general regulatory-DNA marking datasets (ENCODE).
  • GEO depository link: H3K27ac ChIP-seq on right atria and atrioventricular canal tissue (Christoffels laboratory).
  • GEO depository link: Nkx2-5 and Gata4 ChIP-seq on heart tissue (Christoffels laboratory).
  • GEO depository link: TBX3 ChIP-seq on heart tissue (Christoffels laboratory).
  • GEO depository link: Gata4 ChIP-seq on fetal and adult heart tissue (Pu laboratory).
  • GEO depository link: Tbx20 ChIP-seq on heart tissue (Evans laboratory).
  • GEO depository link: Tbx5 ChIP-seq on HL-1 cell line (Pu laboratory).
  • GEO depository link: H3K27ac ChIP-seq on heart tissue (Pennacchio laboratory).
  • GEO depository link: CoupTF2 ChIP-seq on E14.5 atrial tissue (Tsai laboratory).
  • GEO depository link: DNase1 hypersensitivity on heart and brain tissue (ENCODE).
  • Siepel et al. (PhastCon scores) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research. 15: 1034-1050, 2005
  • de Boer and van Duijvenboden et al. OccuPeak: ChIP-Seq Peak Calling Based on Internal Background Modelling. PLoS One. 9(6): e99844., 2014

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    mm9_heart-and-brain_peaks (automated content)