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hg19_heart-and-brain_peaks


All source data is linked in the references below. All the ChIP-seq datasets were processed with OccuPeak to generate genome-wide peak profiles.

References

  • GEO depository link: CTCF ChIP-seq on human cardiomyocyte (HCM) cell line (Stamatoyannopoulous laboratory).
  • GEO depository link: H3K27ac ChIP-seq on cerebellum tissue (Creyghton laboratory).
  • GEO depository link: H3K27ac ChIP-seq on left and right ventricular tissue (Roadmap Epigenomics project).
  • GEO depository link: various ChIP-seq on induced 14d cardiomyocytes (Murry laboratory).
  • GEO depository link: various ChIP-seq on fetal heart tissue (BROAD Institute).
  • GEO depository link: p300 and Pol2 ChIP-seq on heart tissue (Pennacchio laboratory).
  • GEO depository link: Dnase1 hypersensitivity on frontal cortex tissue (ENCODE).
  • GEO depository link: Dnase1 hypersensitivity on human cardiomyocyte (HCM) cell line (ENCODE).
  • Siepel et al. (PhastCon scores) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research. 15: 1034-1050, 2005
  • de Boer and van Duijvenboden et al. OccuPeak: ChIP-Seq Peak Calling Based on Internal Background Modelling. PLoS One. 9(6): e99844., 2014

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    hg19_heart-and-brain_peaks (automated content)