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All ChIP-seq data were generated by the White laboratory. The Dnase1 hypersensitivity data were generated by the Karpen laboratory. All datasets were downloaded from the modENCODE depository. All the ChIP-seq datasets were subsequently processed with OccuPeak to generate genome-wide peak profiles.


  • The modENCODE data depository. The source data and associated laboratories can be found on this website.
  • de Boer and van Duijvenboden et al. OccuPeak: ChIP-Seq Peak Calling Based on Internal Background Modelling. PLoS One. 9(6): e99844., 2014

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    dm3_whole-specimens_peaks (automated content)